Source code pulled from OpenBSD for OpenNTPD. The place to contribute to this code is via the OpenBSD CVS tree.
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# $OpenBSD: changelist,v 1.87 2014/04/29 21:30:20 dcoppa Exp $
#
# List of files which the security script backs up and checks
# for modifications.
#
# Files prefixed with a '+' will have their checksums stored,
# not the actual files.
#
/etc/Distfile
/etc/adduser.conf
/etc/adduser.message
/etc/bgpd.conf
/etc/boot.conf
/etc/bootparams
/etc/changelist
/etc/chio.conf
/etc/crontab
/etc/csh.cshrc
/etc/csh.login
/etc/csh.logout
/etc/daily
/etc/daily.local
/etc/defaultdomain
/etc/dhclient.conf
/etc/dhcpd.conf
/etc/disktab
/etc/distfile
/etc/dvmrpd.conf
/etc/ethers
/etc/exports
/etc/fbtab
/etc/fstab
/etc/ftpchroot
/etc/ftpusers
/etc/ftpwelcome
/etc/gettytab
/etc/group
/etc/hostapd.conf
+/etc/hostname.*
/etc/hosts
/etc/hosts.lpd
/etc/ifstated.conf
+/etc/iked.conf
/etc/inetd.conf
+/etc/ipsec.conf
+/etc/isakmpd/isakmpd.conf
+/etc/isakmpd/isakmpd.policy
/etc/isakmpd/local.pub
+/etc/isakmpd/private/local.key
/etc/ksh.kshrc
/etc/ldapd.conf
/etc/ldpd.conf
/etc/locate.rc
/etc/login.conf
/etc/lynx.cfg
/etc/mail.rc
/etc/mail/access
/etc/mail/aliases
/etc/mail/genericstable
/etc/mail/helpfile
/etc/mail/local-host-names
/etc/mail/localhost.cf
/etc/mail/mailertable
/etc/mail/relay-domains
+/etc/mail/secrets
/etc/mail/sendmail.cf
/etc/mail/smtpd.conf
/etc/mail/spamd.conf
/etc/mail/submit.cf
/etc/mail/trusted-users
/etc/mail/virtual
/etc/mail/virtusertable
/etc/mailer.conf
/etc/man.conf
/etc/master.passwd
/etc/mk.conf
+/etc/moduli
/etc/monthly
/etc/monthly.local
/etc/motd
/etc/mrouted.conf
/etc/mtree/4.4BSD.dist
/etc/mtree/BSD.local.dist
/etc/mtree/BSD.x11.dist
/etc/mtree/special
/etc/mygate
/etc/myname
/etc/netgroup
/etc/netstart
/etc/networks
/etc/newsyslog.conf
/etc/nginx/mime.types
/etc/nginx/nginx.conf
/etc/npppd/npppd.conf
+/etc/npppd/npppd-users
/etc/ntpd.conf
/etc/ospf6d.conf
/etc/ospfd.conf
/etc/passwd
/etc/pf.conf
/etc/pf.os
/etc/pkg.conf
/etc/printcap
/etc/profile
/etc/protocols
+/etc/pwd.db
/etc/rbootd.conf
/etc/rc
/etc/rc.conf
/etc/rc.conf.local
/etc/rc.d/rc.subr
/etc/rc.local
/etc/rc.securelevel
/etc/rc.shutdown
/etc/relayd.conf
/etc/remote
/etc/resolv.conf
/etc/resolv.conf.tail
/etc/ripd.conf
+/etc/rndc.key
/etc/rpc
/etc/rtadvd.conf
/etc/sasyncd.conf
/etc/sensorsd.conf
/etc/services
/etc/shells
/etc/slip.hosts
/etc/slip.login
/etc/snmpd.conf
+/etc/spwd.db
/etc/ssh/ssh_config
+/etc/ssh/ssh_host_dsa_key
/etc/ssh/ssh_host_dsa_key.pub
+/etc/ssh/ssh_host_ecdsa_key
/etc/ssh/ssh_host_ecdsa_key.pub
+/etc/ssh/ssh_host_key
/etc/ssh/ssh_host_key.pub
+/etc/ssh/ssh_host_rsa_key
/etc/ssh/ssh_host_rsa_key.pub
/etc/ssh/sshd_config
/etc/ssl/cert.pem
/etc/sudoers
/etc/suid_profile
/etc/sysctl.conf
/etc/syslog.conf
/etc/sysmerge.ignore
/etc/ttys
/etc/usermgmt.conf
/etc/weekly
/etc/weekly.local
/etc/wsconsctl.conf
/etc/ypldap.conf
/root/.Xdefaults
/root/.cshrc
/root/.login
/root/.profile
/root/.rhosts
/root/.shosts
/root/.ssh/authorized_keys
/root/.ssh/authorized_keys2
/var/cron/at.allow
/var/cron/at.deny
/var/cron/cron.allow
/var/cron/cron.deny
/var/cron/tabs/root
/var/named/etc/named.conf
+/var/named/etc/rndc.key
/var/named/etc/root.hint
/var/named/standard/localhost
/var/named/standard/loopback
/var/named/standard/loopback6.arpa
/var/nsd/etc/nsd.conf
/var/unbound/etc/root.key
/var/unbound/etc/unbound.conf
/var/yp/Makefile.main
/var/yp/Makefile.yp